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BIM ontology

Biomedical Image Ontology (BIM Ontology)

RDF/XML version of this vocabulary. Turtle version of this vocabulary.

Author:

Last update:

03 February 2015

Namespace URI:

http://cbakerlab.unbsj.ca/unbvps/BIM#

Abstract

BIM is an open biomedical image features ontology, it provides semantic vocabularies to represent the biomedical images and their features. BIM specifically addresses the provenance and crowd image annotation issues during biomedical image manipulation.

All terms at a glance

Classes: BiomedicalImage | Calcium_imaging | Charts | ChebiDict | Computed_Tomography | DNA_Sequence | Diffuse_optical_imaging | Diffusion-weighted_imaging | Disease | Drugs | Echocardiography | Elastography | EuropePMCSpecies | Fluorescence_lifetime_imaging | Fluoroscopy | Functional_near-infrared_spectroscopy | Gallium_imaging | Graph | HmmerSearch | Hmmscan | Image | Imaging_agent | JackHmmer | Linear_tomography | Magnetic_Resonance_Imaging | Microscopy | Molecular_imaging | Nuclear_Imaging | Optical_imaging | Optoacoustic_imaging | Phmmer | Photoacoustic_imaging | Poly_tomography | Positron_Emission_Tomography | Positron_Tmission_Tomography | Projectional_radiographs | Protein_Sequence | Radiography | SPECT | ScientificDocument | Scintigraphy | SequenceAnalysisTools | SequenceImage | SequenceImageOCR | SwissProt | SwissProtGo | Tactile_imaging | Thermography | Tomography | Ultrasound | X-ray_computed_tomography | Zonography | swissProt


Properties: ChebiDictTerms | abstract | annotation_end | annotation_start | caption | chebiDictID | chebidict | diseaseID | diseaseName | doi | drugCategory | drugID | drugName | drugs | europePmcSpeciesClass | europePmcSpeciesName | europepmcspecies | europepmcspecies_id | filename | fulltext | hasImageOCR | hasSequenceType | hmmScanBitscore | hmmScanCevalue | hmmScanDescription | hmmScanFamily_Accession | hmmScanFamily_Id | hmmScanID | hmmScanIevalue | hmmScanclan | hmmScanseqEND | hmmScanseqStart | imagId | imageLabel | imageOCR | imageType | pHmmerScanDescription | pHmmerScanKingdom | pHmmerScanSpecies | pHmmerScanTarget | pHmmerScanbitscore | pHmmerScanid | pHmmerScanvalue | pmcid | pmid | prosite_filename | prosite_id | prosite_level | prosite_score | prosite_sequence_acsession | prosite_signature_ac | prosite_start | prosite_stop | scanprosite | swissprot_annotation | swissprot_annotation | swissprot_ids | swissprotgo | swissprotgo_annotation | swissprotgo_ids | swissprotgo_type | title

Overview diagram

Classes

Class: BIM:Calcium_imaging

Calcium_imagingCalcium imaging is a scientific technique usually carried out in research which is designed to show the calcium (Ca2+) status of a cell, tissue or medium.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Calcium_imaging
Superclass:
BIM:BiomedicalImage

Class: BIM:Charts

Charts

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Charts
Superclass:
BIM:Image

Class: BIM:ChebiDict

ChebiDict

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#ChebiDict

Class: BIM:Computed_Tomography

Computed_TomographyComputed Tomography (CT), or Computed Axial Tomography (CAT: A CT scan, also known as a CAT scan), is a helical tomography (latest generation), which traditionally produces a 2D image of the structures in a thin section of the body.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Computed_Tomography
Superclass:
BIM:Tomography

Class: BIM:DNA_Sequence

DNA_Sequence

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#DNA_Sequence
Superclass:
BIM:SequenceImage

Class: BIM:Diffuse_optical_imaging

Diffuse_optical_imagingDiffuse optical imaging (DOI) is a method of imaging using Near Infrared Spectroscopic (NIRS) [1] or Fluorescence based methods.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Diffuse_optical_imaging
Superclass:
BIM:BiomedicalImage

Class: BIM:Diffusion-weighted_imaging

Diffusion-weighted_imaginga type of MRI that uses water diffusion

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Diffusion-weighted_imaging
Superclass:
BIM:Magnetic_Resonance_Imaging

Class: BIM:Disease

Disease

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Disease

Class: BIM:Echocardiography

EchocardiographyEchocardiography allows detailed structures of the heart, including chamber size, heart function, the valves of the heart, as well as the pericardium (the sac around the heart) to be seen.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Echocardiography
Superclass:
BIM:BiomedicalImage

Class: BIM:Elastography

ElastographyElastography is a new imaging modality that maps the elastic properties of soft tissue. This modality emerged in the last decade. Elastography can use ultrasound, magnetic resonance imaging and tactile imaging.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Elastography
Superclass:
BIM:BiomedicalImage

Class: BIM:EuropePMCSpecies

EuropePMCSpecies

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#EuropePMCSpecies

Class: BIM:Fluorescence_lifetime_imaging

Fluorescence_lifetime_imagingusing the decay rate of a fluorescent sample

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Fluorescence_lifetime_imaging
Superclass:
BIM:BiomedicalImage

Class: BIM:Fluoroscopy

FluoroscopyFluoroscopy produces real-time images of internal structures of the body in a similar fashion to radiography, but employs a constant input of x-rays, at a lower dose rate

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Fluoroscopy
Superclass:
BIM:Radiography

Class: BIM:Functional_near-infrared_spectroscopy

Functional_near-infrared_spectroscopyFNIR Is a relatively new non-invasive imaging technique. NIRS (near infrared spectroscopy) is used for the purpose of functional neuroimaging and has been widely accepted as a brain imaging technique

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Functional_near-infrared_spectroscopy
Superclass:
BIM:BiomedicalImage

Class: BIM:Gallium_imaging

Gallium_imaginga nuclear medicine method for the detection of infections and cancers

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Gallium_imaging
Superclass:
BIM:Nuclear_Imaging

Class: BIM:Graph

Graph

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Graph
Superclass:
BIM:Image

Class: BIM:HmmerSearch

HmmerSearch used to search one or more profiles against a protein sequence database.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#HmmerSearch
Superclass:
BIM:SequenceAnalysisTools

Class: BIM:Hmmscan

Hmmscansearch protein sequences against collections of profiles, e.g. Pfam. In HMMER2 this was called hmmpfam.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Hmmscan
Superclass:
BIM:SequenceAnalysisTools

Class: BIM:Imaging_agent

Imaging_agenta chemical designed to allow clinicians to determine whether a mass is benign or malignant

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Imaging_agent

Class: BIM:JackHmmer

JackHmmeriteratively search a query protein sequence, multiple sequence alignment or profile HMM against the target protein sequence database.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#JackHmmer
Superclass:
BIM:SequenceAnalysisTools

Class: BIM:Linear_tomography

Linear_tomographyThis is the most basic form of tomography. The X-ray tube moved from point "A" to point "B" above the patient, while the cassette holder (or "bucky") moves simultaneously under the patient from point "B" to point "A."

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Linear_tomography
Superclass:
BIM:Tomography

Class: BIM:Magnetic_Resonance_Imaging

Magnetic_Resonance_ImagingA magnetic resonance imaging instrument (MRI scanner), or "nuclear magnetic resonance (NMR) imaging" scanner as it was originally known, uses powerful magnets to polarise and excite hydrogen nuclei (single proton) in water molecules in human tissue, producing a detectable signal which is spatially encoded, resulting in images of the body.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Magnetic_Resonance_Imaging
Superclass:
BIM:BiomedicalImage
Subclass:
BIM:Diffusion-weighted_imaging

Class: BIM:Microscopy

Microscopycreating images of objects or features too small to be detectable by the naked human eye

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Microscopy
Superclass:
BIM:BiomedicalImage

Class: BIM:Molecular_imaging

Molecular_imagingused to study molecular pathways inside organisms

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Molecular_imaging
Superclass:
BIM:BiomedicalImage

Class: BIM:Optical_imaging

Optical_imaginga technique to allow cognitive neuroscientists to "see" brain activity

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Optical_imaging
Superclass:
BIM:BiomedicalImage

Class: BIM:Optoacoustic_imaging

Optoacoustic_imagingusing the photothermal effect, for the accuracy of spectroscopy with the depth resolution of ultrasound

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Optoacoustic_imaging
Superclass:
BIM:BiomedicalImage

Class: BIM:Phmmer

Phmmerused to search one or more query protein sequences against a protein sequence database.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Phmmer
Superclass:
BIM:SequenceAnalysisTools

Class: BIM:Photoacoustic_imaging

Photoacoustic_imagingPhotoacoustic imaging is a recently developed hybrid biomedical imaging modality based on the photoacoustic effect. It combines the advantages of optical absorption contrast with ultrasonic spatial resolution for deep imaging in (optical) diffusive or quasi-diffusive regime.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Photoacoustic_imaging
Superclass:
BIM:BiomedicalImage

Class: BIM:Poly_tomography

Poly_tomographyThis was a complex form of tomography. With this technique, a number of geometrical movements were programmed, such as hypocycloidic, circular, figure 8, and elliptical.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Poly_tomography
Superclass:
BIM:Tomography

Class: BIM:Positron_Emission_Tomography

Positron_Emission_TomographyPositron emission tomography also used in conjunction with computed tomography, PET-CT, and magnetic resonance imaging PET-MRI.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Positron_Emission_Tomography
Superclass:
BIM:Tomography

Class: BIM:Positron_Tmission_Tomography

Positron_Tmission_TomographyPositron emission tomography (PET) uses coincidence detection to image functional processes.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Positron_Tmission_Tomography
Superclass:
BIM:Nuclear_Imaging

Class: BIM:Projectional_radiographs

Projectional_radiographsProjectional radiographs, more commonly known as x-rays, are often used to determine the type and extent of a fracture as well as for detecting pathological changes in the lungs

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Projectional_radiographs
Superclass:
BIM:Radiography

Class: BIM:Protein_Sequence

Protein_Sequence

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Protein_Sequence
Superclass:
BIM:SequenceImage

Class: BIM:SPECT

SPECTSPECT is a 3D tomographic technique that uses gamma camera data from many projections and can be reconstructed in different planes.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#SPECT
Superclass:
BIM:Nuclear_Imaging

Class: BIM:ScientificDocument

ScientificDocument

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#ScientificDocument
Properties include:
BIM:abstract, BIM:doi, BIM:pmcid, BIM:pmid

Class: BIM:Scintigraphy

ScintigraphyScintigraphy ("scint") is a form of diagnostic test wherein radioisotopes are taken internally, for example intravenously or orally.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Scintigraphy
Superclass:
BIM:Nuclear_Imaging

Class: BIM:SequenceAnalysisTools

SequenceAnalysisTools

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#SequenceAnalysisTools
Subclasses:
BIM:HmmerSearch, BIM:Hmmscan, BIM:JackHmmer, BIM:Phmmer

Class: BIM:SequenceImageOCR

SequenceImageOCR

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#SequenceImageOCR

Class: BIM:SwissProt

SwissProt

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#SwissProt

Class: BIM:SwissProtGo

SwissProtGo

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#SwissProtGo

Class: BIM:Tactile_imaging

Tactile_imagingTactile imaging is a medical imaging modality that translates the sense of touch into a digital image.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Tactile_imaging
Superclass:
BIM:BiomedicalImage

Class: BIM:Thermography

ThermographyBasically used for the breast imaging. There are three approaches: the tele-thermography, the contact thermography and the dynamic angiothermography.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Thermography
Superclass:
BIM:BiomedicalImage

Class: BIM:Tomography

TomographyTomography is the method of imaging a single plane, or slice, of an object resulting in a tomogram.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Tomography
Superclass:
BIM:BiomedicalImage
Subclasses:
BIM:Computed_Tomography, BIM:Linear_tomography, BIM:Poly_tomography, BIM:Positron_Emission_Tomography, BIM:X-ray_computed_tomography, BIM:Zonography

Class: BIM:Ultrasound

UltrasoundMedical ultrasonography uses high frequency broadband sound waves in the megahertz range that are reflected by tissue to varying degrees to produce (up to 3D) images.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Ultrasound
Superclass:
BIM:BiomedicalImage

Class: BIM:X-ray_computed_tomography

X-ray_computed_tomographyX-ray computed tomography (x-ray CT) is a technology that uses computer-processed x-rays to produce tomographic images (virtual 'slices') of specific areas of the scanned object, allowing the user to see inside without cutting.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#X-ray_computed_tomography
Superclass:
BIM:Tomography

Class: BIM:Zonography

ZonographyThis is a variant of linear tomography, where a limited arc of movement is used. It is still used in some centres for visualising the kidney during an intravenous urogram (IVU).

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#Zonography
Superclass:
BIM:Tomography

Class: BIM:swissProt

swissprotUniProtKB/Swiss-Prot is the manually annotated and reviewed section of the UniProt Knowledgebase (UniProtKB).

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#swissProt

Properties

Property: BIM:ChebiDictTerms

ChebiDictTermsChEBI Terminologies

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#ChebiDictTerms

Property: BIM:abstract

abstractAbstract of scientific artcile

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#abstract
Domain:
BIM:ScientificDocument
Range:
xsd:string

Property: BIM:annotation_end

annotation_endEnd of annotation

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#annotation_end

Property: BIM:annotation_start

annotation_startBeginning of annotation

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#annotation_start

Property: BIM:caption

captionCaption of a figure

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#caption
Domain:
BIM:Image
Range:
xsd:string

Property: BIM:chebiDictID

chebiDictIDUnique Identifier Chemical Entity Recognition of ChEBI

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#chebiDictID

Property: BIM:chebidict

chebidict

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#chebidict

Property: BIM:diseaseID

diseaseID

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#diseaseID

Property: BIM:diseaseName

diseaseName

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#diseaseName

Property: BIM:doi

doiDocument Identification of a scientific docuemnt

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#doi
Domain:
BIM:ScientificDocument
Range:
xsd:string

Property: BIM:drugCategory

drugCategoryDrug Category

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#drugCategory

Property: BIM:drugID

drugIDUnique drug identification number

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#drugID

Property: BIM:drugName

drugNameDrug Name

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#drugName

Property: BIM:drugs

drugs

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#drugs

Property: BIM:europePmcSpeciesClass

europePmcSpeciesClass

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#europePmcSpeciesClass

Property: BIM:europePmcSpeciesName

europePmcSpeciesNameSpecies name from european PMC species database

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#europePmcSpeciesName

Property: BIM:europepmcspecies

europepmcspecies

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#europepmcspecies

Property: BIM:europepmcspecies_id

europepmcspecies_idSpecies ID from European PMC species database

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#europepmcspecies_id

Property: BIM:filename

filenamePubMed Image file name, example 1471-2164-3-4-1

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#filename

Property: BIM:fulltext

fulltextFull text of a pubmed Article

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#fulltext

Property: BIM:hasImageOCR

hasImageOCR

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hasImageOCR

Property: BIM:hasSequenceType

hasSequenceType

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hasSequenceType

Property: BIM:hmmScanBitscore

hmmScanBitscoreA bit score in HMMER is the log of the ratio of the sequence's probability according to the profile (the homology hypothesis) to the null model probability (the non-homology hypothesis).

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanBitscore
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanCevalue

hmmScanCevalue

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanCevalue
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanDescription

hmmScanDescription

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanDescription
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanFamily_Accession

hmmScanFamily_Accession

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanFamily_Accession
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanFamily_Id

hmmScanFamily_Id

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanFamily_Id
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanID

hmmScanID

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanID
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanIevalue

hmmScanIevalue

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanIevalue
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanclan

hmmScanclan

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanclan
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanseqEND

hmmScanseqEND

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanseqEND
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:hmmScanseqStart

hmmScanseqStart

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#hmmScanseqStart
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:imagId

imagIdEvery Image embeded inside a scientific publication has a unique id and could be retrived from PubMed based on that. Example PMC100357/1471-2164-3-4-1

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#imagId
Domain:
BIM:Image
Range:
xsd:string

Property: BIM:imageLabel

imageLabelImage Number/Label of an image inside a scientific publication. Like Figure 1

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#imageLabel
Domain:
BIM:Image
Range:
xsd:string

Property: BIM:imageOCR

imageOCR

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#imageOCR
Domain:
BIM:Image
Range:
xsd:string

Property: BIM:imageType

imageType

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#imageType
Domain:
BIM:Image
Range:
xsd:string

Property: BIM:pHmmerScanDescription

pHmmerScanDescription

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pHmmerScanDescription
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:pHmmerScanKingdom

pHmmerScanKingdom

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pHmmerScanKingdom
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:pHmmerScanSpecies

pHmmerScanSpecies

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pHmmerScanSpecies
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:pHmmerScanTarget

pHmmerScanTarget

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pHmmerScanTarget
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:pHmmerScanbitscore

pHmmerScanbitscore

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pHmmerScanbitscore
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:pHmmerScanid

pHmmerScanid

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pHmmerScanid
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:pHmmerScanvalue

pHmmerScanvalue

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pHmmerScanvalue
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:pmcid

pmcidPubMed Central Identifier of a scientific docuemnt.

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pmcid
Domain:
BIM:ScientificDocument
Range:
xsd:string

Property: BIM:pmid

pmidPubMed Identifier of a scientific docuemnt

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#pmid
Domain:
BIM:ScientificDocument
Range:
xsd:string

Property: BIM:prosite_filename

prosite_filename

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#prosite_filename

Sequence Image File Name IN Prosite Scaning

Property: BIM:prosite_id

prosite_id

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#prosite_id
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:prosite_level

prosite_level

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#prosite_level
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:prosite_score

prosite_score

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#prosite_score
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:prosite_sequence_acsession

prosite_sequence_acsession

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#prosite_sequence_acsession
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:prosite_signature_ac

prosite_signature_ac

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#prosite_signature_ac
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:prosite_start

prosite_start

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#prosite_start
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:prosite_stop

prosite_stop

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#prosite_stop
Domain:
BIM:SequenceImage
Range:
xsd:string

Property: BIM:scanprosite

scanprositeSequences to scan them against the PROSITE collection of motifs

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#scanprosite

Sequences to scan them against the PROSITE collection of motifs

Property: BIM:swissprot_annotation

swissprot_annotationSwissProt annotation generated through NLP web services

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#swissprot_annotation

Property: BIM:swissprot_annotation

swissprot_annotationswiss prot annotation extracted by the protein NLP tagger from image caption

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#swissprot_annotation

Property: BIM:swissprot_ids

swissprot_idsUnique identifier of UniProtKB/Swiss-Prot database

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#swissprot_ids

Property: BIM:swissprotgo

swissprotgo

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#swissprotgo

Property: BIM:swissprotgo_annotation

swissprotgo_annotationSwissProt GO annotation generating through text mining algorithm

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#swissprotgo_annotation

Property: BIM:swissprotgo_ids

swissprotgo_idsUnique ID of Go and SwissProt Terminology

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#swissprotgo_ids

Property: BIM:swissprotgo_type

swissprotgo_typeSwissProt annotation type

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#swissprotgo_type

Property: BIM:title

titleTitle of an image,

URI:
http://cbakerlab.unbsj.ca/unbvps/BIM#title
Domain:
BIM:Image
Range:
xsd:string
Department of Computer Science and Applied Statistics, University of New Brunswick, Saint John Canada